Publications

Citing/Using Research Computing Resources

2012

Dhamodharan A., Proano R.A., Determining the optimal vaccine vial size in developing countries: A Monte Carlo simulation approach, Healthcare Management Science (2012), 15:188-196, doi: 10.1007/s10729-012-9200-4

Cignarale C., Proano R.A., Kuhl M., Optimizing patient-to-bed assignments under isolation requirements, Proceedings of the 2012 Industrial and Systems Engineering Research Conference, Orlando, FL, (2012)

Herweg, Jared, PhD Candidate, Center for Imaging Science, RIT
Advisor: John Kerekes
"Hyperspectral Imaging and Association Phenomenology of Pedestrians in a Cluttered Urban Environment, PhD Thesis, August 2012.

Pahlevan, N., Garrett, A., Gerace, A. D. and Schott, J. R. (2012). “Integrating Landsat 7 Imagery with Physics-based Models for Quantitative Mapping of Coastal Waters near River Discharges”. Accepted for publication in Photogrammetric Engineering and Remote Sensing PE&RS.

Sarah Paul, PhD Candidate, Center for Imaging Science, RIT
Advisor: Carl Salvaggio
Subpixel Temperature Estimation from Single-Band Thermal Infrared Imagery, PhD Thesis, August 2012

Zhaolin Lu, Professor, Microsystems Engineering Ph.D Program, RIT
Wangshi Zhao, PhD candidate, Microsystems Engineering Program, RIT
Kaifeng Shi, PhD candidate, Microsystems Engineering Program, RIT
Ultracompact Electroabsorption Modulators Based on Tunable Epsilon-Near-Zero-Slot Waveguides, IEEE Photonics Journal, Volume 4, Number 3, June 2012. (PDF)

Nima Pahlevan, PhD Candidate, Center for Imaging Science, RIT
Advisor: John R. Schott, Professor, Center for Imaging Science, Rochester Institute of Technology
An Integrated physics-based approach to demonstrate the potential of the Landsat Data Continuity Mission (LDCM) for monitoring coastal/inland waters, PhD Thesis, Jun 2012. PDF

2011

Sarah E Paul, Carl Salvaggio, Center for Imaging Science, Digital Imaging Remote Sensing Laboratory, RIT. "A polynomial regression approach to subpixel temperature extraction from a single-band thermal infrared image". Thermosense: Thermal Infrared Applications XXXIII, edited by Morteza Safai, Jeff R. Brown, Proc. of SPIE Vol. 8013, 801302.

Chance Glenn, Professor, College of Applied Science & Technology, RIT
Advanced Developments in Image Processing, Keynote speech at ICOEIS 2011, Xi'an University of Technology, Dec. 23-25, 2011.

Michael Pratt, MS Candidate, Department of Computer Science, RIT
Advisor: Stanislaw Radziszowski, Professor, Department of Computer Science, RIT
A Study of the Parallelism and Efficiency of the Index Calculus Algorithm, MS Thesis, Nov 2011. PDF

Pahlevan, N., and Schott, J., “Investigation the Potential of the Operational Land Imager (OLI) for Monitoring Case II Waters Using a Look-Up-Table Approach” submitted to ASPRS 18th William T. Pecora Memorial Remote Sensing Symposium for publication Nov, 2011.

Pahlevan N., Gerace A.D., Schott J.R., “Using thermal remote sensing as a tool for calibrating a hydrodynamic model in inland waters”, Proceedings of SPIE, Ocean Sensing and Monitoring III, Vol. 8030, 80300I, Orlando, Florida, May 2011.

Alvin Spivey, PhD Candidate, Center for Imaging Science, RIT
Advisor: Anthony Vodacek
Multiple scale landscape pattern index interpretation for the persistent monitoring of land-cover and land-use, PhD Thesis, May 2011. PDF

Nakisa Nassersharif, Syracuse University,
Megan Sinton, Bucknell University,
Bernard Brooks, Professor, School of Mathematical Sciences, RIT
Generating Dynamic Adjustable Weighted Social Networks (submitted)

David Rivshin, (Masters, Computer Science Department, RIT)
Stanislaw Radziszowski, Professor, Computer Science Department, RIT
Multi-Vertex Deletion Graph Reconstruction Numbers, Journal of Combinatorial Mathematics and Combinatorial Computing, 78 (2011) 303-321. (PDF)

Proano R.A., Professor, Industrial and Systems Engineering, RIT
Jacobson S.H., Zhang W.,
Making combination vaccines more accessible to low-income countries: The antigen bundle pricing problem, Omega, (2011) doi:10.1016/j.omega.2011.03.006 link

Dhamodharan A.,
Proano R.A., Professor, Industrial and Systems Engineering, RIT
Kumar S.,
A stochastic approach to determine the optimal vaccine vial size, Proceedings of the 2011 Industrial Engineering Research Conference (2011)

Christopher J. Nassar, Rochester Institute of Technology
Joseph F. Revellia, Rochester Institute of Technology
Robert J. Bowman, Professor, Rochester Institute of Technology
Application of the homotopy analysis method to the Poisson–Boltzmann equation for semiconductor devices, Communications in Nonlinear Science and Numerical Simulation Volume 16, Issue 6, June 2011, Pages 2501-2512.

Brian Flusche, PhD Candidate, Center for Imaging Science, RIT
Advisor: John R. Schott, Professor, Center for Imaging Science, Rochester Institute of Technology
An Analysis of multimodal sensor fusion for target detection in an urban environment, PhD Thesis, Jan 2011. PDF

2010

Brian M. Flusche, PhD candidate, Center for Imaging Science, Rochester Institute of Technology
Michael G. Gartley, Associate Scientist, Center for Imaging Science, Rochester Institute of Technology
John R. Schott, Professor, Center for Imaging Science, Rochester Institute of Technology

Assessing the impact of spectral and polarimetric data fusion via simulation to support multimodal system design requirements, J. Appl. Remote Sens., Vol. 4, 043562 (2010) [doi:10.1117/1.3525590] PDF

Defining a process to fuse polarimetric and spectral data for target detection and explore the trade space via simulation J. Appl. Remote Sens., Vol. 4, 043550 (2010) [doi:10.1117/1.3516616] PDF

Exploiting spectral and polarimetric data fusion to enhance target detection performance, Proc. SPIE, Vol. 7812, 78120C (2010); doi:10.1117/12.860640. abstract

Jacqueline Speir, Ph.D. candidate, Center for Imaging Science, RIT
Advisor: John Schott, Center for Imaging Science, RIT

Validation of 3d radiative transfer in coastal-ocean water systems as modeled by DIRSIG, Ph.D. Thesis, July 2010. PDF

Aaron Gerace, PhD Candidate, Center for Imaging Science, RIT
Advisor: John Schott, Center for Imaging Science, RIT

Demonstrating Landsat’s New Potential to Monitor Coastal and Inland Waters, PhD Thesis, May 2010. PDF

Edward M. Harding Jr., Masters student, Mechanical Engineering, RIT
Risa J. Robinson, Professor, Mechanical Engineering, RIT
Flow in a terminal alveolar sac model with expanding walls using computational fluid dynamics Inhalation Toxicology, Pages 1-10. Posted online on 13 May 2010. full text

Emily J. Berg, Masters student, Mechanical Engineering, Rochester Institute of Technology
Jessica L. Weisman, Medical Illustration, Rochester Institute of Technology
Michael J. Oldham, Department of Community and Environmental Medicine, University of California at Irvine
Risa J. Robinson, Professor, Mechanical Engineering, Rochester Institute of Technology

Flow field analysis in a compliant acinus replica model using particle image velocimetry (PIV), Journal of Biomechanics, Volume 43, Issue 6, 19 April 2010, Pages 1039-1047. weblink

Garrett, A.J.; Salvaggio, C.; Casterline, M.V., Thermodynamics of partially frozen cooling lakes, Proceedings of SPIE, SPIE Defense and Security, Thermosense XXXII, Utilities and Fluid Dynamics, 7661, 2, Orlando, Florida, United States, April (2010)

Casterline, M.V.; Salvaggio, C.; Garrett, A.J.; Faulring, J.W.; Bartlett, B.D.; Salvaggio, P.S., Improved temperature retrieval methods for the validation of a hydrodynamic simulation of a partially frozen power plant cooling lake,Proceedings of SPIE, SPIE Defense and Security, Thermosense XXXII, Utilities and Fluid Dynamics, 7661, Orlando, Florida, United States, April (2010)

Paul, S.E.; Goodenough, A.A.; Brown, S.D.; Salvaggio, C., Sub-pixel radiometry: A three-part study in generating synthetic imagery that incorporates sub-pixel variation, Proceedings of SPIE, SPIE Defense and Security, Algorithms and Technologies for Multispectral, Hyperspectral, and Ultraspectral Imagery XVI, Modeling and Simulation, 7695, Orlando, Florida, United States, April (2010)

2009

Young Sam Yu, Ph.D. candidate, Center for Imaging Science, RIT
Advisor: Joel Kastner, Center for Imaging Science, RIT

High Spatial/Spectral Resolution X-ray Observations and Volumetric 3D Modeling of Superheated Plasma in the Planetary Nebula BD+30◦3639, Ph.D. Thesis, November 2009. PDF

Scott Franklin, Professor, Physics, Rochester Institute of Technology
Random Packings of Rod-like Granular Materials, presented at the 62nd Annual Meeting of the APS Division of Fluid Dynamics, Volume 54, Number 19, Nov 2009. abstract

Vrunda Sheth, Masters student, Department of Bioinformatics, RIT
Advisor: Vicente Reyes, Department of Bioinformatics,

Visualization of protein 3D structure in a reduced representation with simultaneous display of intra and inter-molecular hydrogen bonds and van der Waals interactions, Master's Thesis, October 2009, PDF

Jason Tillett, Research Associate, Department of Electrical and Computer Engineering, University of Rochester

A k-space method for acoustic propagation using coupled first-order equations in three dimensions, J. Acoust. Soc. Am., Vol. 126, No. 3, pp. 1231-144, September 2009.

Shawn Higbee, PhD Candidate, Center for Imaging Science, RIT
Advisor: David Messinger, Center for Imaging Science

A Bayesian approach to identification of gaseous effluents in passive LWIR imagery, PhD Thesis, July, 2009. PDF

Susan M. Munn, PhD Candidate, Center for Imaging Science, RIT
Advisors: Jeff Pelz, Center for Imaging Science

3D Head Motion, Point-of-Regard and Encoded Gaze Fixations in Real Scenes: Next Generation Portable Video-Based Monocular Eye Tracking, PhD Thesis, June, 2009. PDF research website

George Privon, Master's student, Center for Imaging Science, RIT
Advisors: Dr. Stefi Baum, Dr. Christopher O'Dea.

Modeling the Infrared Emission from Cygnus A, Master's Thesis, May, 2009. abstract PDF

Matthew Montanaro, PhD Candidate, Center for Imaging Science, RIT
Advisor: Carl Salvaggio, Center for Imaging Science, RIT
Advisor: David W. Messinger, Center for Imaging Science, RIT
Advisor: Edward C. Hensel, Mechanical Engineering, RIT
Advisor: Alfred J. Garrett, Savannah River National Laboratory

Radiometric Modeling of Mechanical Draft Cooling Towers to Assist in the Extraction of their Absolute Temperature from Remote Thermal Imagery, PhD Thesis, May 2009. PDF

Matthew Montanaro, PhD Candidate, Center for Imaging Science, RIT

Matthew Montanaro, Carl Salvaggio, Scott D. Brown, David W. Messinger, Alfred J. Garrett , and James S. Bollinger, Radiometric Modeling of Mechanical Draft Cooling Towers to Assist in the Extraction of their Absolute Temperature from Remote Thermal Imagery, Proceedings of SPIE Defense, Security, and Sensing Conference, Orlando, Apr 13-17, 2009. PDF

Montanaro, M.; Salvaggio, C.; Brown, S.D.; Messinger, D.W.; Garrett, A.J.; Bollinger, J.S., Radiometric modeling of mechanical draft cooling towers to assist in the extraction of their absolute temperature from remote thermal imagery, Proceedings of the SPIE, SPIE Defense and Security, Thermosense XXXI, Infrared Sensors and Systems, 7299, 8, Orlando, Florida, United States, April (2009)

Arsenovic, M.V.; Salvaggio, C.; Garrett, A.J.; Bartlett, B.D.; Faulring, J.W.; Kremens, R.L.; Salvaggio, P.S., Use of remote sensing data to enhance the performance of a hydrodynamic simulation of a partially frozen power plant cooling lake, Proceedings of the SPIE, SPIE Defense and Security, Thermosense XXXI, Infrared Sensors and Systems, 7299, 10, Orlando, Florida, United States, April (2009)

Brian Daniel, PhD Candidate, Center for Imaging Science, RIT
Advisor: John Schott, Center for Imaging Science, RIT

A system study of sparse aperture sensors in remote sensing applications with explicit phase retrieval, PhD Thesis, March 2009. PDF

Karl Baum, Post Doctoral Researcher, Center for Imaging Science, RIT

Canosa, R. L., Baum, K. G., Modeling Decision-Making in Single- and Multi-Modal Medical Images, Proceedings of SPIE Medical Imaging Conference, Orlando, Feb. 8-12, 2009.

2008

Ruoxi Yang, PhD Candidate, Microsystems, RIT
Mustafa A. Abushagur, Professor, Microsystems, RIT
Zhaolin Lu, Professor, Microsystems, RIT

Ruoxi Yang, Mustafa A. Abushagur, and Zhaolin Lu, "Efficiently squeezing near infrared light into a 21nm-by-24nm nanospot," Opt. Express 16, 20142-20148 (2008) PDF

David Merritt, Professor, Physics and Center for Computational Relativity and Gravitation, RIT
Alessia Gualandris, Post Doctoral Researcher, Physics and Center for Computational Relativity and Gravitation, RIT

Explaining the Orbits of the Galactic Center S-Stars. David Merritt, Alessia Gualandris, Seppo Mikkola. Dec 2008 arXiv.org astro-ph arXiv:0812.4517

Edward Harding, Masters student, Mechanical Engineering, RIT
Risa Robinson, Professor, Mechanical Engineering, RIT
Kambiz Nazridoust, Post Doctoral Researcher, Division of Computational Biology, Hamner Institutes for Health Sciences, RTP, NC

Flow in Expanding Alveolar Model during Unsteady Tidal Breathing using Computational Fluid Dynamics. Edward Harding, Risa Robinson, and Kambiz Nazridoust. AAAR 27th Annual Conference. October 20-24, 2008. Orlando, Florida. poster

Stanislaw Radziszowski, Professor, Computer Science, RIT
David Rivshin, Masters student, Computer Science, RIT

David Rivshin and Stanislaw Radziszowski, Reconstruction Numbers of Small Graphs. Paper presented at the Thirty-Ninth Southeastern International Conference on Combinatorics, Graph Theory, and Computing held at the Florida Atlantic University in Boca Raton, Florida on March 3-7, 2008. RIT Newsmaker

Montanaro, M.; Salvaggio, C.; Messinger, D.W.; Brown, S.D.; Garrett, A.J., Apparent temperature dependence on localized atmospheric water vapor, Proceedings of the SPIE, SPIE Defense and Security, Sensor Data Exploitation and Target Recognition, Algorithms and Technologies for Multispectral, Hyperspectral, and Ultraspectral Imagery XIV, 6966, 696618, Orlando, Florida, United States of America, pp. 1505-1516, April (2008)

Scott Franklin, Professor, Physics, RIT

Jamming in Hopper Flow of Large Aspect Ratio Granular Materials. Presented at the 2008 American Physical Society March Meeting, New Orleans, March 11, 2008 abstract

Karl Baum, PhD Candidate, Center for Imaging Science, RIT
Advisor: Maria Helguera

Multimodal Breast Imaging: Registration, Visualization, and Image Synthesis. PhD Thesis, February, 2008. PDF

2007

Karl Baum, Ph.D. Candidate, Center for Imaging Science, RIT
Maria Helguera, Professor, Center for Imaging Science, RIT

Baum, K. G., Helguera, M. Execution of the SimSET Monte Carlo PET/SPECT Simulator in the Condor Distributed Computing Environment. Journal of Digital Imaging, Vol. 20, Supplement 1, 72-82, 2007. abstract full text

Janine B. Garnham, Master's student, Computer Engineering, RIT

Parallelization of the Maximum Likelihood Approach to Phylogenetic Inference, Master's Thesis, August 2007.

David Rivshin, Masters student, Computer Science, RIT

A Computational Investigation of Graph Reconstruction, Master's Project Report, August 5, 2007.

Michael Foster, Ph.D. Candidate, Center for Imaging Science, RIT

Use of Lidar data to geometrically-constrain spectral spaces for physics-based target detection. SPIE Conference on Imaging Spectrometry in San Diego. Paper to be presented on 28 August 2007.

Robert Stevens, Professor, Mechanical Engineering, RIT

Stevens, Robert & Brown, Thomas. (2007) Modeling Thermal Transport at Single Interfaces and in Nanostructured Materials Using Molecular Dynamics and Monte Carlo Techniques. Material Research Society Spring Meeting, San Francisco. abstract ppt

Anurag Sinha, Masters student, ECTET, RIT

Analysis and Optimization of a New Dynamical Systems Based Transform for the Compression of Digital Audio, Video and Image Data, Master's Thesis, Spring 2007.

Luis Caceres Chong, Masters student, ECTET, RIT

DYNAMAC Media Distribution System, Master's Thesis, Fall 2006-7.

Chance Glenn, Professor, ECTET, RIT, Director, William G. McGowan Center for Telecommunications Innovation and Collaborative Research

Patent Application: A New Digital Modulation Technique Based upon Fourier Series Waveform Synthesis, applied April 2007.

Montanaro, M.; Salvaggio, C.; Brown, S.D.; Messinger, D.W.; Goodenough, A.A.; Garrett, A.J.; Villa-Aleman, E.,Radiometric modeling of cavernous targets to assist in the determination of absolute temperature for input to process models, Proceedings of the SPIE, SPIE Defense and Security, Sensor Data Exploitation and Target Recognition, Algorithms and Technologies for Multispectral, Hyperspectral, and Ultraspectral Imagery XIII, 6565, 656511, doi:10.1117/12.718666, Orlando, Florida, United States of America, pp. 656511/1-656511/10, April(2007) 2006

Patent Application: Methods for Data Compression Based on Nonlinear Dynamical Systems and Systems Thereof, applied March 2006.

C. M. Glenn and T. Rossi, Implementation of a New Codec for Broadcast and Digital Rights Management of High Definition Television, 4th Annual Conference on Telecommunications and Information Technology, Conference Proceedings, March 2006.

David Mathews, Professor, Biochemistry and Biophysics, University of Rochester

Uzilov, A. V., Keegan, J. M., & Mathews, D. H. (2006) Detection of non-coding RNAs on the basis of predicted secondary structure formation free energy change. BMC Bioinformatics. 7:173. abstract pdf

2005

C. M. Glenn, New Approaches to Telecommunications Technologies using Nonlinear Dynamical Systems Theory, IEEE Upstate NY Workshop on Communications and Networking, Conference Proceedings, November 2005.

C. M. Glenn, M. Eastman, and N. Curtis, Digital Rights Management and Streaming of Audio, Video, and Image Data Using a New Dynamical Systems Based Compression Algorithm, IADAT Conference on Telecommunications and Computer Networks , Conference Proceedings, September 2005.

David Mathews, Professor, Biochemistry and Biophysics, University of Rochester Mathews, D. H. (2005). Predicting a set of minimal free energy RNA secondary structures common to two sequences. Bioinformatics. 21, 2246-2253. Supplementary Material. abstract full text

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